STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2959TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: stm:STM3248 tartronate semialdehyde reductase. (295 aa)    
Predicted Functional Partners:
Amet_0678
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; MOFRL domain protein; KEGG: tma:TM1585 glycerate kinase, putative.
 
  
 0.824
Amet_0505
PFAM: HpcH/HpaI aldolase; KEGG: ter:Tery_2821 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.734
Amet_3108
PFAM: Carboxymuconolactone decarboxylase; KEGG: rba:RB7019 hypothetical protein.
  
  
 0.666
Amet_2960
PFAM: chemotaxis sensory transducer; KEGG: dsy:DSY0999 hypothetical protein.
     
 0.551
Amet_3675
TIGRFAM: ketose-bisphosphate aldolase; fructose-1,6-bisphosphate aldolase, class II; PFAM: ketose-bisphosphate aldolase, class-II; KEGG: cth:Cthe_0349 fructose-1,6-bisphosphate aldolase, class II.
 
    0.526
Amet_0226
PFAM: type III effector Hrp-dependent outers; KEGG: mta:Moth_0726 type III effector Hrp-dependent outers.
 
  
 0.521
ribBA
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
 0.511
Amet_4338
TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bha:BH3316 succinate-semialdehyde dehydrogenase.
  
 0.465
Amet_2953
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: ppd:Ppro_2951 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
   
 0.435
Amet_2958
Citrate lyase ligase; Acetylation of prosthetic group (2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A) of the gamma subunit of citrate lyase.
       0.434
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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