STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3064Hypothetical protein; KEGG: ctc:CTC02250 modification methylase bstVI. (748 aa)    
Predicted Functional Partners:
Amet_3063
Hypothetical protein.
       0.773
Amet_0849
PFAM: restriction modification system DNA specificity domain; KEGG: bca:BCE_0842 type I restriction-modification enzyme, S subunit, putative.
  
 
 0.763
Amet_1608
PFAM: restriction modification system DNA specificity domain; KEGG: lin:lin0523 hypothetical protein.
  
 
 0.763
Amet_4057
PFAM: restriction modification system DNA specificity domain; KEGG: mma:MM2293 type I restriction-modification system specificity subunit.
  
 
 0.763
Amet_1609
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.724
Amet_3300
PFAM: protein of unknown function DUF450; KEGG: mma:MM2204 putative type I restriction enzyme R protein.
  
 
 0.724
Amet_4056
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.724
Amet_0847
PFAM: helicase domain protein; type III restriction protein, res subunit; protein of unknown function DUF450; SMART: DEAD-like helicases-like; KEGG: bca:BCE_0840 type I restriction-modification system, R subunit.
  
 
 0.633
Amet_3301
KEGG: tde:TDE0367 hypothetical protein.
  
    0.510
Amet_1114
KEGG: ctc:CTC00782 hypothetical protein.
  
     0.508
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.