STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3143Hypothetical protein. (157 aa)    
Predicted Functional Partners:
Amet_3144
PFAM: CheW domain protein; KEGG: chy:CHY_1030 chemotaxis protein CheW.
       0.432
Amet_3141
PFAM: regulatory protein, LuxR; response regulator receiver; KEGG: cth:Cthe_1267 two component transcriptional regulator, LuxR family.
       0.425
Amet_3142
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein; Sensor DegS domain protein; histidine kinase, dimerisation and phosphoacceptor region; KEGG: cth:Cthe_1268 histidine kinase.
       0.425
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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