STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3165PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; virulence factor MVIN family protein; KEGG: cth:Cthe_2688 polysaccharide biosynthesis protein. (531 aa)    
Predicted Functional Partners:
Amet_2459
PFAM: protein of unknown function DUF965; KEGG: chy:CHY_0540 hypothetical protein; Belongs to the UPF0297 family.
  
     0.673
Amet_2991
PFAM: protein of unknown function DUF633; KEGG: tte:TTE1754 predicted SAM-dependent methyltransferase.
  
     0.648
Amet_4484
KEGG: mta:Moth_2466 ribosomal protein L7Ae/L30e/S12e/Gadd45.
  
    0.554
Amet_4495
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-H type; RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH3113 RNA polymerase sigma-70 factor.
  
    0.545
Amet_2765
TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_1274 nucleoside recognition.
  
  
 0.534
Amet_2748
Putative helix-turn-helix protein, YlxM/p13 family protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.523
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
     0.485
Amet_2496
TIGRFAM: Sporulation stage III, protein AE; KEGG: bha:BH2793 mutants block sporulation after engulfment.
  
  
 0.478
Amet_1269
PFAM: glutamine synthetase, catalytic region; KEGG: cno:NT01CX_0655 glutamine synthetase.
 
     0.464
Amet_0169
PFAM: YabP family protein; KEGG: tte:TTE2450 hypothetical protein.
 
  
 0.459
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.