STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3171KEGG: cth:Cthe_0313 hypothetical protein. (345 aa)    
Predicted Functional Partners:
Amet_0549
PFAM: phospholipase C zinc-binding protein; KEGG: cth:Cthe_3193 phospholipase C zinc-binding.
  
     0.662
Amet_3703
KEGG: cth:Cthe_2170 hypothetical protein.
  
     0.606
Amet_0139
KEGG: ctc:CTC00249 hypothetical protein.
  
     0.602
Amet_1114
KEGG: ctc:CTC00782 hypothetical protein.
  
   
 0.579
Amet_2534
PFAM: phage integrase family protein; KEGG: dsy:DSY1571 hypothetical protein; Belongs to the 'phage' integrase family.
  
     0.574
Amet_1269
PFAM: glutamine synthetase, catalytic region; KEGG: cno:NT01CX_0655 glutamine synthetase.
  
     0.565
Amet_1281
PFAM: Accessory gene regulator B; KEGG: cpf:CPF_1813 putative accessory gene regulator protein B.
  
     0.547
Amet_4772
KEGG: cth:Cthe_2259 hypothetical protein.
  
     0.547
Amet_1725
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cpr:CPR_1840 TPR domain protein.
  
    0.529
Amet_1362
KEGG: cpe:CPE1479 hypothetical protein.
  
     0.517
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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