STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3191Response regulator receiver protein; KEGG: cno:NT01CX_1567 probable enzyme with TIM-barrel fold. (222 aa)    
Predicted Functional Partners:
Amet_0817
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.647
Amet_3751
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.647
Amet_4663
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cth:Cthe_1461 FAD dependent oxidoreductase.
  
 
 0.605
Amet_3192
Hypothetical protein.
       0.542
Amet_3030
Diacylglycerol kinase; PFAM: phosphoesterase, PA-phosphatase related; diacylglycerol kinase; KEGG: tte:TTE0973 Diacylglycerol kinase.
  
   
 0.531
Amet_4657
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0445 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
  
 0.514
Amet_0445
PFAM: FAD linked oxidase domain protein; KEGG: afu:AF0394 D-lactate dehydrogenase, cytochrome-type (dld).
  
 0.510
Amet_0764
D-lactate dehydrogenase (cytochrome); PFAM: FAD linked oxidase domain protein; KEGG: cno:NT01CX_1206 oxidoreductase, FAD-binding.
  
 0.510
Amet_0821
PFAM: FAD linked oxidase domain protein; KEGG: cac:CAC2542 FAD/FMN-containing dehydrogenase.
  
 0.510
Amet_3747
PFAM: FAD linked oxidase domain protein; KEGG: tte:TTE0224 FAD/FMN-containing dehydrogenases.
  
 0.510
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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