Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Amet_3203PFAM: spore germination B3 GerAC family protein; KEGG: dsy:DSY2110 hypothetical protein. (383 aa)    
Predicted Functional Partners:
Amet_3202
PFAM: GerA spore germination protein; KEGG: chy:CHY_0336 spore germination protein GerKA.
 
  
 0.935
Amet_3201
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cac:CA_P0022 spore germination protein, GrkB.
 
  
 0.897
Amet_0513
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: bcz:BCZK2852 spore germination protein; possible amino acid permease.
 
  
 0.796
Amet_1283
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: swo:Swol_1192 hypothetical protein.
 
  
 0.784
Amet_0514
PFAM: GerA spore germination protein; KEGG: bcz:pE33L466_0139 spore germination protein KA.
 
  
 0.781
Amet_3204
Hypothetical protein.
       0.777
Amet_0871
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: tte:TTE2554 spore germination protein homolog YndE.
 
  
 0.774
Amet_1285
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
 
  
 0.770
Amet_3075
PFAM: GerA spore germination protein; KEGG: ctc:CTC02448 spore germination protein KA.
 
  
 0.758
Amet_0870
PFAM: GerA spore germination protein; KEGG: tte:TTE2555 putative spore germination protein.
 
  
 0.744
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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