STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3226PFAM: Citrate carrier protein; KEGG: ppr:PBPRA2296 putative citrate-sodium symporter. (446 aa)    
Predicted Functional Partners:
Amet_3222
PFAM: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; KEGG: ctc:CTC02556 citX protein.
 
   
 0.718
Amet_3225
Citrate lyase acyl carrier protein; Covalent carrier of the coenzyme of citrate lyase.
 
   
 0.684
Amet_3223
TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase, alpha subunit; KEGG: ctc:CTC02559 citrate lyase alpha chain.
 
   
 0.662
Amet_3224
Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: fnu:FN1379 citrate lyase beta chain / citryl-CoA lyase subunit; Belongs to the HpcH/HpaI aldolase family.
 
   
 0.658
Amet_2967
Signal transduction histidine kinase regulating citrate/malate metabolism; PFAM: ATP-binding region, ATPase domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: bat:BAS0545 sensory box histidine kinase.
 
  
 0.637
Amet_2966
Response regulator receiver and unknown domain protein; PFAM: response regulator receiver; KEGG: oih:OB3219 truncated two-component response regulator.
 
    0.596
Amet_1303
Response regulator receiver and unknown domain protein; PFAM: response regulator receiver; KEGG: bha:BH2751 two-component response regulator.
 
    0.572
Amet_3229
Malate dehydrogenase (oxaloacetate-decarboxylating); PFAM: malic protein domain protein; malic protein, NAD-binding; KEGG: ctc:CTC02463 NAD-dependent malic enzyme.
  
  
 0.514
Amet_3228
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; KEGG: ppd:Ppro_3165 signal transduction histidine kinase with CheB and CheR activity.
 
     0.457
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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