STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3296PFAM: CDP-alcohol phosphatidyltransferase; KEGG: cpf:CPF_0561 CDP-alcohol phosphatidyltransferase family protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (197 aa)    
Predicted Functional Partners:
cinA
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cac:CAC3586 competence-damage inducible protein, CINA; Belongs to the CinA family.
  
  
 0.925
Amet_3295
KEGG: dde:Dde_0759 extracellular solute-binding protein, putative.
 
     0.912
Amet_3293
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: nca:Noca_2070 binding-protein-dependent transport systems inner membrane component.
 
    0.804
Amet_3294
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_0308 ABC transporter, permease protein, putative.
 
    0.761
Amet_3298
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: cpr:CPR_2072 cysteine-rich domain protein.
 
     0.755
Amet_3297
PFAM: SNARE associated Golgi protein; KEGG: dsy:DSY2706 hypothetical protein.
 
     0.742
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
  
 0.532
Amet_3291
PFAM: Rhodanese domain protein; KEGG: cpr:CPR_1124 putative thiosulfate sulfurtransferase.
 
     0.520
Amet_3292
PFAM: ABC transporter related; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cpe:CPE1270 probable ABC transporter; Belongs to the ABC transporter superfamily.
  
    0.506
Amet_3290
SMART: Rhodanese domain protein; KEGG: ppr:PBPRA1240 putative thiosulfate sulfur transferase.
 
     0.489
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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