STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3318PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3682 multiple sugar transport system permease protein. (300 aa)    
Predicted Functional Partners:
Amet_3319
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3681 multiple sugar transport system permease protein.
 0.997
Amet_3320
PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH3680 multiple sugar transport system substrate-binding protein.
 
 0.991
Amet_3323
PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: tte:TTE1979 ABC-type sugar/spermidine/putrescine/iron/thiamine transport systems, ATPase component.
 0.985
Amet_4738
PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 0.985
Amet_0894
PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cno:NT01CX_0964 ABC transporter (TOBE domain and ATPase domain).
 0.984
Amet_1733
PFAM: ABC transporter related; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: tma:TM0421 multiple sugar transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.981
Amet_0897
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component.
 
 0.941
Amet_4743
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1078 hypothetical protein.
 
 0.941
Amet_1734
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lca:LSEI_0990 ABC-type sugar transport system, permease component.
 
 0.939
Amet_1736
PFAM: extracellular solute-binding protein, family 1; KEGG: tma:TM0595 multiple sugar transport system substrate-binding protein.
 
 
 0.898
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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