STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3427Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; KEGG: bha:BH1535 D-alanyl-D-alanine carboxypeptidase (penicilin binding protein); Belongs to the peptidase S11 family. (257 aa)    
Predicted Functional Partners:
Amet_3325
PFAM: peptidase M15B and M15C, D,D-carboxypeptidase VanY/endolysin; KEGG: oih:OB0530 carboxypeptidase.
   
 0.958
Amet_2319
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE0925 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.925
Amet_2643
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE1328 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 
0.920
Amet_2223
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: cth:Cthe_1760 penicillin-binding protein, 1A family.
  
 
 0.913
Amet_2528
Serine-type D-Ala-D-Ala carboxypeptidase; PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: tte:TTE1314 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
  
 
0.910
Amet_3426
PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; KEGG: cth:Cthe_0977 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanyl ligase.
 
  
 0.720
Amet_2880
TIGRFAM: cell division protein FtsW; stage V sporulation protein E; PFAM: cell cycle protein; KEGG: tte:TTE1646 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
   
 0.617
Amet_2885
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; PASTA domain containing protein; KEGG: tte:TTE1651 Cell division protein FtsI/penicillin-binding protein 2.
  
 0.595
Amet_3054
PFAM: Stage II sporulation P family protein; KEGG: tte:TTE0947 stage II sporulation protein P.
   
  
 0.508
Amet_0095
PFAM: nucleoside recognition domain protein; KEGG: mta:Moth_1356 nucleoside recognition.
  
  
 0.507
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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