STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Amet_3460TIGRFAM: flavocytochrome c; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FMN-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC01488 fumarate reductase flavoprotein subunit. (602 aa)    
Predicted Functional Partners:
Amet_4657
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0445 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
 
 0.951
hutH
TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; KEGG: tte:TTE0844 histidine ammonia-lyase; Belongs to the PAL/histidase family.
  
 
  0.903
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
     
 0.902
Amet_4335
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: gka:GK2332 NADH-dependent flavin oxidoreductase.
 
  
 0.877
Amet_3095
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: swo:Swol_0657 NADH dehydrogenase (quinone).
  
 
 0.863
Amet_1676
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
  
  
 0.715
Amet_4663
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cth:Cthe_1461 FAD dependent oxidoreductase.
  
 
 0.686
Amet_4108
NADH dehydrogenase (quinone); PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: tte:TTE0893 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit.
 
 
 0.651
Amet_0766
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Electron transfer flavoprotein, alpha/beta-subunit-like; Electron transfer flavoprotein, alpha subunit-like; KEGG: cno:NT01CX_1204 electron transfer flavoprotein, alpha subunit.
  
 
 0.638
Amet_1332
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: chy:CHY_0869 iron-sulfur cluster-binding protein.
 
 
 0.596
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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