STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3464PFAM: protein of unknown function DUF1456; KEGG: bce:BC0368 hypothetical cytosolic protein. (175 aa)    
Predicted Functional Partners:
Amet_3463
Hypothetical protein.
       0.678
Amet_0131
PFAM: UV-endonuclease UvdE; Protein of unknown function DUF1722; KEGG: cno:NT01CX_0232 UV DNA damage endonuclease (UV-endonuclease) UvdE.
  
     0.503
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
   
    0.485
Amet_2982
Membrane protein-like protein; KEGG: lsa:LSA0870 hypothetical protein.
   
    0.485
minE
Cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.482
Amet_3465
Hypothetical protein.
       0.463
Amet_3739
KEGG: pin:Ping_1432 hypothetical protein.
  
     0.453
Amet_1220
SMART: RNA binding S1 domain protein; KEGG: cno:NT01CX_0180 S1 RNA binding domain; Belongs to the CvfB family.
 
     0.416
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.