STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3517TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cac:CAC0259 fusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogenase iron-molibdenum cofactor biosynthesis protein). (415 aa)    
Predicted Functional Partners:
Amet_3518
Nitrogenase; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0259 fusion nifN/K+nifB (nifN-nitrogenase iron molybdenum cofactor biosinthesis protein, nifK-nitrogenase molibdenum-iron protein beta chain, nifB-nitrogenase iron-molibdenum cofactor biosynthesis protein); Belongs to the NifD/NifK/NifE/NifN family.
  
 0.990
Amet_3520
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.989
Amet_3519
TIGRFAM: nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0258 nitrogenase iron-molibdenum cofactor biosinthesis protein, gene nifE; Belongs to the NifD/NifK/NifE/NifN family.
  
 0.942
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein.
 
  
 0.939
Amet_3521
TIGRFAM: nitrogenase molybdenum-iron protein alpha chain; nitrogenase component I, alpha chain; PFAM: oxidoreductase/nitrogenase, component 1; KEGG: cac:CAC0256 nitrogenase molybdenum-iron protein, alpha chain (nitrogenase component I) gene nifD.
 
  
 0.921
Amet_3523
PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0254 nitrogen regulatory protein PII (nitrogen fixation nifHD).
 
  
 0.868
Amet_3516
KEGG: mgm:Mmc1_0047 ferredoxin, 2Fe-2S.
 
   
 0.847
Amet_3522
PFAM: nitrogen regulatory protein P-II; KEGG: cac:CAC0255 nitrogen regulatory protein PII (nitrogen fixation nifHD); Belongs to the P(II) protein family.
 
  
 0.792
Amet_3515
PFAM: pyruvate carboxyltransferase; KEGG: tte:TTE0472 homocitrate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
  
 0.677
Amet_0061
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dsy:DSY2224 hypothetical protein.
  
  
 0.544
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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