STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3602Oxidoreductase domain protein; PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: bat:BAS3390 oxidoreductase, Gfo/Idh/MocA family. (351 aa)    
Predicted Functional Partners:
Amet_0459
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tte:TTE1948 sugar phosphate isomerase/epimerase.
 
  
 0.802
Amet_3438
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: tte:TTE0651 predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.676
Amet_4338
TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bha:BH3316 succinate-semialdehyde dehydrogenase.
  
  
 0.657
Amet_0892
PFAM: PfkB domain protein; KEGG: gka:GK1957 2-keto-3-deoxy-gluconate kinase.
 
  
 0.617
lysS
TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase, class II (D, K and N); nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: tte:TTE2372 lysyl-tRNA synthetase class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.600
Amet_2041
PFAM: NmrA family protein; KEGG: lwe:lwe1807 hypothetical protein.
  
 
 0.585
Amet_1262
PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase.
  
  
 0.568
Amet_1349
PFAM: PfkB domain protein; KEGG: yhfQ; putative kinase.
  
  
 0.568
Amet_2529
Polynucleotide adenylyltransferase region; PFAM: CBS domain containing protein; phosphoesterase, RecJ domain protein; Polynucleotide adenylyltransferase region; KEGG: cth:Cthe_0684 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
  
 0.554
Amet_3603
PFAM: uncharacterised conserved protein UCP033563; KEGG: cac:CAC0016 related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning.
       0.521
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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