STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3617PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mla:Mlab_1378 hypothetical protein. (418 aa)    
Predicted Functional Partners:
Amet_3618
PFAM: transport system permease protein; KEGG: ctc:CTC00784 iron(III) dicitrate transport system permease protein fecD; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.992
Amet_3619
PFAM: periplasmic binding protein; KEGG: sth:STH1929 iron ABC transporter substrate-binding protein.
 
 
 0.978
Amet_3773
PFAM: transport system permease protein; KEGG: cpr:CPR_0795 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.964
Amet_3772
PFAM: transport system permease protein; KEGG: cpe:CPE0812 probable ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.961
Amet_3774
PFAM: periplasmic binding protein; KEGG: cpf:CPF_0807 iron compound ABC transporter, iron compound-binding protein.
 
 
 0.873
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.807
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
     
 0.767
Amet_3614
TIGRFAM: putative L-threonine-O-3-phosphate decarboxylase; PFAM: aminotransferase, class I and II; KEGG: fnu:FN0973 histidinol-phosphate aminotransferase.
     
 0.761
Amet_3620
PFAM: Phosphoglycerate mutase; KEGG: cth:Cthe_3153 phosphoglycerate mutase.
     
 0.505
Amet_4628
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH0514 iron(III) transport system permease protein.
   
  
 0.490
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.