STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3652PFAM: NAD(P)H dehydrogenase (quinone); KEGG: bca:BCE_5095 NAD(P)H dehydrogenase, quinone family. (194 aa)    
Predicted Functional Partners:
Amet_1440
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mac:MA4347 menaquinone biosynthesis methyltransferase (2-heptaprenyl-1,4-naphthoquinone methyltransferase).
     
 0.901
Amet_3918
KEGG: sus:Acid_3161 palmitoyl-CoA hydrolase.
  
     0.698
Amet_4777
PFAM: sodium/hydrogen exchanger; KEGG: ctc:CTC01423 putative Na(+)/H(+) antiporter.
  
 
 0.598
Amet_1648
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: nfa:nfa25650 putative decarboxylase.
    
  0.570
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.570
Amet_3651
KEGG: cno:NT01CX_1222 hypothetical protein.
       0.556
Amet_3920
PFAM: BAAT/Acyl-CoA thioester hydrolase-like; KEGG: cac:CAC3407 acyl-CoA thioesterase 1.
  
    0.550
Amet_0504
PFAM: aminotransferase, class I and II; KEGG: art:Arth_1423 aminotransferase, class I and II.
   
    0.487
Amet_1616
PFAM: aminotransferase, class I and II; KEGG: mja:MJ1391 aspartate aminotransferase.
   
    0.487
Amet_2618
PFAM: aminotransferase, class I and II; KEGG: ftn:FTN_0410 aspartate/tyrosine/aromatic aminotransferase.
   
    0.487
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.