STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3669PFAM: S-layer domain protein; protein of unknown function DUF187; KEGG: cth:Cthe_0054 protein of unknown function DUF187. (731 aa)    
Predicted Functional Partners:
Amet_4135
Exopolysaccharide biosynthesis protein; KEGG: cth:Cthe_2182 Ig-like, group 2; related to N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase-like protein.
 
     0.594
Amet_0914
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_3188 copper amine oxidase-like protein.
 
     0.564
Amet_3668
KEGG: tte:TTE0912 hypothetical protein.
       0.508
Amet_1090
ADP-ribosylation/Crystallin J1; PFAM: TPR repeat-containing protein; ADP-ribosylation/Crystallin J1; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mtp:Mthe_0488 ADP-ribosylation/crystallin J1.
 
  
 0.465
Amet_3648
KEGG: bce:BC4676 hypothetical cytosolic protein.
  
     0.451
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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