STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3720TIGRFAM: C_GCAxxG_C_C family protein; KEGG: efa:EF0664 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Amet_3721
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: efa:EF0645 exfoliative toxin A, putative.
 
   
 0.932
aroK
Chorismate mutase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
 
   
 0.602
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.585
Amet_1379
KEGG: nph:NP1830A hypothetical protein.
  
     0.568
Amet_2144
PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein.
  
  
 0.544
Amet_4522
KEGG: tte:TTE2338 hypothetical protein.
 
 
 0.521
Amet_0702
PFAM: PfkB domain protein; KEGG: chy:CHY_0076 kinase, PfkB family.
  
  
 0.496
Amet_4605
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
 
    0.479
Amet_3717
PFAM: ABC-2 type transporter; KEGG: bcl:ABC2123 multidrug ABC transporter permease.
  
    0.470
Amet_3719
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcl:ABC2121 multidrug ABC transporter ATP-binding protein.
  
    0.469
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.