STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3726PFAM: protein of unknown function DUF421; KEGG: dsy:DSY3481 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Amet_0870
PFAM: GerA spore germination protein; KEGG: tte:TTE2555 putative spore germination protein.
 
  
 0.636
Amet_1285
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
 
  
 0.608
Amet_0514
PFAM: GerA spore germination protein; KEGG: bcz:pE33L466_0139 spore germination protein KA.
 
  
 0.601
Amet_2219
TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: tte:TTE1319 spore formation protein spoVAC.
 
  
 0.590
Amet_2221
TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: cno:NT01CX_1809 stage V sporulation protein AE.
 
  
 0.578
Amet_2863
PFAM: Stage II sporulation P family protein; KEGG: tte:TTE1625 stage II sporulation protein P.
  
     0.573
Amet_4223
TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: bcl:ABC1827 stage V sporulation protein AE.
 
  
 0.572
Amet_2854
Sporulation stage IV, protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.561
Amet_3202
PFAM: GerA spore germination protein; KEGG: chy:CHY_0336 spore germination protein GerKA.
 
  
 0.560
Amet_4600
PFAM: GerA spore germination protein; KEGG: tte:TTE2555 putative spore germination protein.
 
  
 0.558
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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