STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3742KEGG: swo:Swol_1797 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Amet_0954
KEGG: cth:Cthe_2213 hypothetical protein.
  
     0.488
Amet_3741
Hypothetical protein.
       0.449
Amet_3506
KEGG: bha:BH1891 hypothetical protein.
  
     0.418
Amet_0483
PFAM: peptidase M20; KEGG: cac:CAC0367 arginine degradation protein (gene RocB).
  
     0.411
Amet_4148
KEGG: cth:Cthe_2695 hypothetical protein.
  
     0.401
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.