STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3775PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: gfo:orf1663 AraC family transcriptional regulator protein. (333 aa)    
Predicted Functional Partners:
Amet_3774
PFAM: periplasmic binding protein; KEGG: cpf:CPF_0807 iron compound ABC transporter, iron compound-binding protein.
 
  
 0.875
Amet_3772
PFAM: transport system permease protein; KEGG: cpe:CPE0812 probable ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.798
Amet_3773
PFAM: transport system permease protein; KEGG: cpr:CPR_0795 iron compound ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.793
Amet_3771
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpr:CPR_0797 ferrichrome transport ATP-binding protein FhuC.
 
  
 0.763
Amet_2144
PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein.
   
 
 0.754
Amet_3770
PFAM: major facilitator superfamily MFS_1; KEGG: btk:BT9727_2273 permease; possible macrolide-efflux protein.
 
     0.684
Amet_0544
PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: bld:BLi00865 YfiF.
 
 
 0.659
Amet_0763
PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cac:CAC2608 trancriptional regulator of AraC family.
  
     0.483
Amet_0888
PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bsu:BG13508 similar to transcriptional regulator (AraC/XylS family).
  
     0.449
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.410
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.