STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3799KEGG: rle:RL3617 putative solute-binding component of ABC transporter. (365 aa)    
Predicted Functional Partners:
Amet_3797
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 
 0.992
Amet_3798
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1909 ABC transporter (ATP-binding protein).
  
 0.945
xylG
ABC transporter related; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family.
  
 0.847
Amet_2812
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: mta:Moth_2020 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.839
xylA
TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: tma:TM1667 xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.683
Amet_0896
PFAM: extracellular solute-binding protein, family 1; KEGG: yps:YPTB2362 putative ABC type periplasmic sugar-binding protein.
  
  
 0.583
Amet_3800
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
     0.522
Amet_3320
PFAM: extracellular solute-binding protein, family 1; KEGG: bha:BH3680 multiple sugar transport system substrate-binding protein.
  
  
 0.518
Amet_0587
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK1894 sugar ABC transporter (ATP-binding protein).
  
 0.485
Amet_3795
PFAM: ROK family protein; KEGG: cac:CAC3673 XylR transcriptional regulator.
 
     0.465
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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