STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3809PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ctc:CTC01411 transcriptional regulatory protein. (331 aa)    
Predicted Functional Partners:
Amet_3808
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3479 hypothetical protein.
 
  
 0.760
Amet_2144
PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein.
   
 
 0.754
Amet_3807
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3478 hypothetical protein.
 
  
 0.724
Amet_0888
PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bsu:BG13508 similar to transcriptional regulator (AraC/XylS family).
  
     0.685
Amet_0544
PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; KEGG: bld:BLi00865 YfiF.
 
 
 0.630
Amet_3811
KEGG: dsy:DSY4223 hypothetical protein.
 
     0.596
Amet_4740
KEGG: dsy:DSY1081 hypothetical protein.
  
 
   0.586
Amet_3806
TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dsy:DSY3766 hypothetical protein.
 
     0.569
Amet_1911
PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: bha:BH0851 transcriptional regulator (AraC/XylS family).
  
     0.555
Amet_4675
PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cpr:CPR_0208 transcriptional regulator, AraC family.
  
     0.542
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.