STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3838PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like. (99 aa)    
Predicted Functional Partners:
Amet_3829
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dsy:DSY4998 hypothetical protein.
 
 
 0.915
Amet_0265
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dde:Dde_3273 ethanolamine utilization protein EutN.
 
 
 0.879
Amet_4575
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: chy:CHY_0688 ethanolamine utilization protein EutN.
 
 
 0.879
Amet_3840
KEGG: ctc:CTC01451 membrane spanning protein.
 
     0.779
Amet_3837
PFAM: microcompartments protein; KEGG: dde:Dde_3284 carbon dioxide concentrating mechanism protein (PduA related)-like.
 
    
0.750
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
 
     0.709
Amet_3839
KEGG: dde:Dde_3289 hypothetical protein.
       0.680
Amet_3831
TIGRFAM: ethanolamine utilization protein EutJ family protein; KEGG: ctc:CTC01444 ethanolamine utilization protein eutJ.
 
  
 0.663
Amet_3834
PFAM: microcompartments protein; KEGG: ctc:CTC01447 ethanolamine utilization protein eutS.
 
  
 0.600
Amet_3830
PFAM: microcompartments protein; KEGG: dsy:DSY4999 hypothetical protein.
 
   
 0.599
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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