STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3856PFAM: protein of unknown function UPF0016; KEGG: sat:SYN_01349 hypothetical membrane protein. (148 aa)    
Predicted Functional Partners:
Amet_3852
PFAM: beta-lactamase domain protein; KEGG: cth:Cthe_2754 beta-lactamase-like protein.
     0.962
Amet_4329
PFAM: protein of unknown function UPF0016; KEGG: pmn:PMN2A_0359 hypothetical protein.
  
     0.734
Amet_3853
Hypothetical protein.
       0.494
Amet_3854
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: dsy:DSY0836 hypothetical protein.
       0.494
Amet_3855
PFAM: Integrase, catalytic region; KEGG: bha:BH3965 transposase (22).
       0.494
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.