STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3892TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: oih:OB3327 hypothetical conserved protein. (268 aa)    
Predicted Functional Partners:
Amet_3893
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pin:Ping_3537 ABC transporter substrate binding inner membrane protein.
 0.999
Amet_0931
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bxe:Bxe_A0996 ABC methionine transporter, inner membrane subunit.
 0.998
metN
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 0.998
Amet_0932
ABC transporter related; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Methionine importer (TC 3.A.1.24) family.
 0.995
Amet_0930
PFAM: NLPA lipoprotein; KEGG: fnu:FN0658 ABC transporter substrate-binding protein; Belongs to the nlpA lipoprotein family.
  
  
 
0.907
Amet_3891
KEGG: dsy:DSY3881 hypothetical protein.
       0.762
Amet_3492
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
   
  
 0.546
Amet_0057
Cysteine synthase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: cac:CAC0102 O-acetylhomoserine (thiol)-lyase.
  
    0.511
Amet_3376
TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase, class I and II; KEGG: lmf:LMOf2365_0624 O-acetylhomoserine (thiol)-lyase.
  
    0.511
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.414
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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