STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_3936PFAM: ABC-2 type transporter; KEGG: sma:SAV6712 hypothetical protein. (258 aa)    
Predicted Functional Partners:
Amet_3937
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV6711 putative ABC transporter ATP-binding protein.
 
  
 0.940
Amet_3905
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK0910 ABC transporter (ATP-binding protein).
 
  
 0.831
Amet_0234
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2297 daunorubicin resistance ABC transporter ATP-binding subunit.
 
  
 0.813
Amet_3719
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bcl:ABC2121 multidrug ABC transporter ATP-binding protein.
 
  
 0.699
Amet_4206
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_1310 ABC-type multidrug transport system, ATP-ase compoment CAC0241.
 
  
 0.682
Amet_1501
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component.
 
  
 0.669
Amet_3935
Putative transcriptional regulator, MerR family; SMART: regulatory protein, MerR; KEGG: dsy:DSY3460 hypothetical protein.
 
    0.554
Amet_3904
PFAM: ABC-2 type transporter; KEGG: gka:GK0909 ABC transporter (permease).
  
  
 
0.543
Amet_0235
PFAM: ABC-2 type transporter; KEGG: mbu:Mbur_0388 ABC efflux pump, inner membrane subunit.
  
  
 
0.539
Amet_4204
PFAM: ABC-2 type transporter; KEGG: cac:CAC0243 predicted permease.
  
  
  0.496
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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