STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4002Hypothetical protein. (528 aa)    
Predicted Functional Partners:
Amet_4003
Hypothetical protein.
       0.721
Amet_4004
SMART: helix-turn-helix domain protein; KEGG: cth:Cthe_1750 hypothetical protein.
       0.687
Amet_4001
Hypothetical protein.
       0.631
Amet_4000
KEGG: tte:TTE2462 hypothetical protein.
       0.566
Amet_4006
PFAM: Recombinase; KEGG: bca:BCE_0418 hypothetical protein.
       0.421
Amet_4005
PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bca:BCE_0419 DNA recombinase, putative.
       0.419
Amet_4007
PFAM: Resolvase, N-terminal domain; Recombinase; KEGG: bca:BCE_0417 DNA recombinase, putative.
       0.419
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.