STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4030TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: det:DET1087 portal protein, HK97 family, putative. (419 aa)    
Predicted Functional Partners:
Amet_4029
PFAM: peptidase S14, ClpP; KEGG: cth:Cthe_1629 peptidase S14, ClpP.
  
 0.994
Amet_4028
TIGRFAM: phage major capsid protein, HK97 family; PFAM: phage major capsid protein, HK97; KEGG: bca:BCE_0400 phage major capsid protein, HK97 family.
 
 
 0.977
Amet_4025
TIGRFAM: phage head-tail adaptor, putative; KEGG: bca:BCE_0403 phage head-tail adaptor, putative.
 
   0.913
Amet_4022
TIGRFAM: phage major tail protein, phi13 family; KEGG: bca:BCE_0406 phage major tail protein, phi13 family subfamily.
 
   
 0.896
Amet_4038
KEGG: det:DET0065 virulence-related protein.
 
  
 0.889
Amet_4033
PFAM: phage Terminase; KEGG: bca:BCE_0397 phage terminase, large subunit, putative.
 
   
 0.883
Amet_4042
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: det:DET0069 HNH endonuclease domain protein.
 
  
 0.872
Amet_4024
TIGRFAM: phage protein, HK97 gp10 family; KEGG: cth:Cthe_1625 phage protein, HK97 GP10 family.
 
    0.870
Amet_4023
KEGG: cth:Cthe_1624 hypothetical protein.
 
    0.867
Amet_4041
KEGG: bca:BCE_0390 hypothetical protein.
 
    0.851
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.