STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4091Protein of unknown function UPF0052 and CofD; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family. (429 aa)    
Predicted Functional Partners:
Amet_4092
Uncharacterised P-loop ATPase protein UPF0042; Displays ATPase and GTPase activities.
  
  
 0.964
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
 
  
 0.880
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.692
Amet_2780
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0573 protein serine/threonine phosphatases.
  
  
 0.663
Amet_1778
KEGG: swo:Swol_2283 hypothetical protein.
   
  
 0.547
Amet_4713
KEGG: ctc:CTC00154 hypothetical protein.
  
  
 0.534
Amet_1029
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: oih:OB2530 attenuator for lytABC and LytR expression.
  
     0.521
Amet_2311
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: tte:TTE0920 transcriptional regulator.
  
     0.467
Amet_3581
Transcriptional regulator, DeoR family; PFAM: putative sugar-binding domain protein; KEGG: tte:TTE1763 Transcriptional regulator, contains sigma factor-related N-terminal domain.
 
   
 0.463
Amet_0009
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bcl:ABC0815 anti-sigma B factor.
   
    0.461
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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