STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4097PFAM: Rubrerythrin; KEGG: tko:TK1056 rubrerythrin-related protein. (165 aa)    
Predicted Functional Partners:
Amet_4316
PFAM: Shikimate/quinate 5-dehydrogenase; KEGG: tte:TTE2374 hypothetical protein.
   
 
 0.515
Amet_4526
KEGG: tte:TTE2375 hypothetical protein.
   
 
 0.515
Amet_0796
Flagellin-specific chaperone FliS-like protein; KEGG: gme:Gmet_0445 flagellar protein FliS.
  
     0.511
Amet_1676
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
  
  
 0.495
Amet_4657
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0445 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
  
 0.486
Amet_3966
PFAM: protein of unknown function DUF262; KEGG: cpr:CPR_0892 hypothetical protein.
  
     0.453
Amet_4180
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cth:Cthe_1771 rubrerythrin.
 
  
 0.434
Amet_0842
Phage protein; KEGG: cno:NT01CX_2190 phage protein.
  
     0.431
Amet_2642
KEGG: tte:TTE1329 hypothetical protein.
   
 
 0.429
pyrK
Oxidoreductase FAD/NAD(P)-binding domain protein; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
   
 
 0.429
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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