STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4223TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: bcl:ABC1827 stage V sporulation protein AE. (117 aa)    
Predicted Functional Partners:
Amet_4224
PFAM: Stage V sporulation AD family protein; KEGG: gka:GK0854 stage V sporulation protein SpoVAD.
 
  
 0.965
Amet_4226
PFAM: protein of unknown function DUF421; protein of unknown function DUF1657; KEGG: gka:GK0857 hypothetical protein.
 
  
 0.943
Amet_4225
TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: btl:BALH_4637 stage V sporulation protein AC.
 
  
0.873
Amet_2220
PFAM: Stage V sporulation AD family protein; KEGG: tte:TTE1320 spore formation protein spoVAD.
 
  
 0.863
Amet_4227
PFAM: protein of unknown function DUF1657; KEGG: oih:OB1383 hypothetical protein.
 
     0.862
Amet_3212
PFAM: GerA spore germination protein; KEGG: bld:BLi02663 hypothetical protein.
 
   
 0.821
spoIIAB
Putative anti-sigma regulatory factor, serine/threonine protein kinase; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
 
     0.806
Amet_0514
PFAM: GerA spore germination protein; KEGG: bcz:pE33L466_0139 spore germination protein KA.
  
  
 0.780
Amet_1285
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
  
  
 0.780
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.780
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.