STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4227PFAM: protein of unknown function DUF1657; KEGG: oih:OB1383 hypothetical protein. (68 aa)    
Predicted Functional Partners:
Amet_4226
PFAM: protein of unknown function DUF421; protein of unknown function DUF1657; KEGG: gka:GK0857 hypothetical protein.
 
     0.961
Amet_4225
TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: btl:BALH_4637 stage V sporulation protein AC.
 
     0.923
Amet_4224
PFAM: Stage V sporulation AD family protein; KEGG: gka:GK0854 stage V sporulation protein SpoVAD.
 
     0.896
Amet_4223
TIGRFAM: Sporulation stage V, protein AE; PFAM: SpoVA protein; KEGG: bcl:ABC1827 stage V sporulation protein AE.
 
     0.862
Amet_1361
KEGG: cno:NT01CX_0507 hypothetical protein.
 
     0.853
Amet_0143
KEGG: cth:Cthe_0065 hypothetical protein.
  
     0.728
Amet_2646
KEGG: bsu:BG13848 hypothetical protein.
  
     0.650
Amet_4593
KEGG: gka:GK0611 hypothetical protein.
  
     0.587
Amet_2217
KEGG: bce:BC4069 stage V sporulation protein AB.
  
     0.556
Amet_2216
KEGG: bce:BC4070 stage V sporulation protein AA.
  
     0.535
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.