STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4262TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: ctc:CTC02522 ribonuclease BN; Belongs to the UPF0761 family. (276 aa)    
Predicted Functional Partners:
Amet_4261
KEGG: ava:Ava_4088 hypothetical protein.
 
    0.677
Amet_0337
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: chy:CHY_2559 low molecular weight protein-tyrosine-phosphatase.
  
  
 0.580
Amet_0511
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
    0.564
Amet_1484
PFAM: amidinotransferase; KEGG: cpe:CPE0344 hypothetical protein.
  
    0.464
Amet_0009
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: bcl:ABC0815 anti-sigma B factor.
  
    0.463
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.417
Amet_0967
Diguanylate cyclase and metal dependent phosphohydrolase; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; metal-dependent phosphohydrolase, HD sub domain; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; metal-dependent phosphohydrolase, HD region; KEGG: dsy:DSY1176 hypothetical protein.
 
   
 0.415
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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