STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4267PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: ecv:APECO1_3598 putative oxidoreductase. (421 aa)    
Predicted Functional Partners:
Amet_4269
TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: eca:ECA0087 PTS system, mannitol-specific IIabc component.
 
  
 0.932
Amet_4271
TIGRFAM: PTS system, mannitol-specific IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system, lactose/cellobiose-specific IIB subunit; KEGG: gka:GK1948 PTS system, mannitol-permease II, BC component.
 
    0.846
Amet_4270
Transcriptional antiterminator, BglG; PFAM: PRD domain protein; Helix-turn-helix, type 11 domain protein; KEGG: tte:TTE0598 putative transcriptional regulator.
 
  
 0.841
Amet_4268
1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: cac:CAC0232 1-phosphofructokinase (fructoso 1-phosphate kinase); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
       0.783
Amet_4657
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0445 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
  
 0.588
Amet_3634
Pyridoxal phosphate-dependent acyltransferase, putative; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
  
  
 0.556
Amet_1676
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
     
 0.523
Amet_4266
PFAM: transcriptional coactivator/pterin dehydratase; KEGG: rxy:Rxyl_2043 transcriptional coactivator/pterin dehydratase.
  
    0.487
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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