STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4371Hypothetical protein. (97 aa)    
Predicted Functional Partners:
Amet_4369
KEGG: mfa:Mfla_2702 hypothetical protein.
       0.783
Amet_4370
Hypothetical protein.
       0.774
Amet_4372
Hypothetical protein.
       0.774
Amet_4368
Hypothetical protein.
       0.773
Amet_4367
PFAM: transcription antitermination protein NusG; SMART: NGN domain protein; KEGG: tte:TTE0730 Transcription antiterminator.
       0.752
Amet_4373
Hypothetical protein.
       0.516
Amet_4374
PFAM: cell wall hydrolase/autolysin; KEGG: bld:BLi01974 N-acetylmuramoyl-L-alanine amidase cwlL precursor (Cell wall hydrolase) (Autolysin); RBL04154.
       0.417
Amet_4366
TIGRFAM: phage uncharacterized protein; KEGG: bha:BH3533 hypothetical protein.
       0.410
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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