STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4553KEGG: pgi:PG1069 alcohol dehydrogenase, zinc-containing, putative. (345 aa)    
Predicted Functional Partners:
Amet_4548
PFAM: cobalamin B12-binding domain protein; KEGG: tte:TTE0727 D-lysine 5,6-aminomutase beta subunit.
 
 
 0.992
Amet_4549
PFAM: D-Lysine 5,6-aminomutase alpha subunit; KEGG: tte:TTE0726 D-lysine 5,6-aminomutase alpha subunit.
 
 
  0.991
Amet_0318
PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 protein of unknown function DUF849.
 
  
  0.978
Amet_4551
KEGG: tte:TTE0724 hypothetical protein.
 
     0.934
Amet_4552
TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; KEGG: ctc:CTC00890 L-lysine 2,3-aminomutase.
 
     0.870
Amet_4550
DNA mismatch repair protein MutS domain protein; Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity. Belongs to the DNA mismatch repair MutS family. MutS2 subfamily.
 
     0.813
Amet_0317
KEGG: tte:TTE0718 acyl-CoA hydrolase.
 
 
   0.804
Amet_2978
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: gme:Gmet_0555 two component, sigma54 specific, transcriptional regulator, fis family.
 
      0.728
Amet_4248
Sigma54 specific transcriptional regulator, Fis family; PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: ctc:CTC00707 transcriptional regulatory protein.
 
 
    0.637
Amet_3255
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; KEGG: gsu:GSU1320 sigma-54 dependent DNA-binding response regulator.
 
      0.617
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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