STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4625PFAM: beta-lactamase domain protein; KEGG: tma:TM1162 conserved hypothetical protein; Belongs to the UPF0173 family. (223 aa)    
Predicted Functional Partners:
Amet_2227
KEGG: cac:CAC0449 hypothetical protein.
   
    0.448
Amet_2859
KEGG: tte:TTE1621 hypothetical protein.
   
    0.448
Amet_4512
PFAM: UvrB/UvrC protein; AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: tte:TTE2327 ATPases with chaperone activity, ATP-binding subunit; Belongs to the ClpA/ClpB family.
  
    0.447
Amet_4626
PFAM: protein of unknown function DUF6, transmembrane; KEGG: ctc:CTC00807 membrane protein, putative transporter.
       0.445
Amet_4064
PFAM: thioesterase superfamily protein; KEGG: cth:Cthe_1260 4-hydroxybenzoyl-CoA thioesterase.
 
 
   0.430
Amet_4624
TIGRFAM: phosphate binding protein; KEGG: mma:MM2005 phosphate-binding protein.
       0.411
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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