STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4675PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: cpr:CPR_0208 transcriptional regulator, AraC family. (226 aa)    
Predicted Functional Partners:
Amet_3846
Transcription activator, effector binding; PFAM: helix-turn-helix- domain containing protein, AraC type; transcription activator, effector binding; KEGG: bcz:BCZK2776 transcriptional regulator, AraC family.
 
     0.764
Amet_2144
PFAM: sigma-70 region 4 domain protein; RNA polymerase, alpha subunit domain protein; KEGG: ppe:PEPE_0533 hypothetical protein.
   
 
 0.754
Amet_1428
PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: lac:LBA0355 transcriptional regulator.
 
     0.622
Amet_3809
PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ctc:CTC01411 transcriptional regulatory protein.
  
     0.542
Amet_4432
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: cac:CAC3409 transcriptional regulators, LysR family.
  
  
 0.486
Amet_3536
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase internal region; Cupin 2, conserved barrel domain protein; KEGG: cpf:CPF_1171 sensor histidine kinase.
 
 
 0.445
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.410
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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