STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4720PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease. (292 aa)    
Predicted Functional Partners:
Amet_4719
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2077 nickel transport system ATP-binding protein.
 
 0.997
Amet_4718
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bha:BH2078 nickel transport system ATP-binding protein.
 
 0.995
Amet_1134
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0987 putative oligopeptide transporter.
 
 0.994
Amet_4721
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease.
 
 0.993
Amet_4722
TIGRFAM: nickel ABC transporter, periplasmic nickel-binding protein; PFAM: extracellular solute-binding protein, family 5; KEGG: wsu:WS0982 putative nikA protein.
 0.984
Amet_1135
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: wsu:WS0988 oligopeptide ABC transporter ATP-binding protein.
 
 0.975
Amet_1132
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease.
 
 0.969
Amet_2005
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1521 dipeptide transport system permease protein dppB.
 
 0.966
Amet_2008
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1524 dipeptide transport ATP-binding protein dppD; Belongs to the ABC transporter superfamily.
  
 0.918
Amet_2048
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sav:SAV0992 oligopeptide ABC transporter ATP-binding protein homologue.
  
 0.912
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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