STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4739PFAM: extracellular solute-binding protein, family 1; KEGG: dsy:DSY1083 hypothetical protein. (786 aa)    
Predicted Functional Partners:
Amet_4740
KEGG: dsy:DSY1081 hypothetical protein.
 
    0.958
Amet_4741
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dsy:DSY1080 hypothetical protein.
 
    0.951
Amet_4742
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1079 hypothetical protein.
 
 
 0.947
Amet_4743
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY1078 hypothetical protein.
 
 
 0.943
Amet_4738
PFAM: ABC transporter related; TOBE domain protein; transport-associated protein OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
 
 
 0.858
Amet_1920
KEGG: mac:MA0852 bacitracin ABC transporter, permease protein.
  
     0.763
Amet_4737
Hypothetical protein.
 
    0.760
Amet_0897
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component.
 
 
 0.757
Amet_0898
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yps:YPTB2360 putative sugar ABC transporter (permease).
 
 
 0.753
Amet_1419
PFAM: GCN5-related N-acetyltransferase; KEGG: ljo:LJ1236 hypothetical protein.
  
     0.747
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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