STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_4745PFAM: protein of unknown function DUF214; KEGG: smu:SMU.1093 putative ABC transporter, permease protein. (470 aa)    
Predicted Functional Partners:
Amet_4744
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bad:BAD_0931 ABC transporter domain protein.
 
 
 0.979
Amet_4746
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE1017 sensory transduction histidine kinase.
 
    0.808
Amet_4740
KEGG: dsy:DSY1081 hypothetical protein.
 
  
 0.742
Amet_3345
PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: bha:BH1977 hypothetical protein.
  
     0.706
Amet_4739
PFAM: extracellular solute-binding protein, family 1; KEGG: dsy:DSY1083 hypothetical protein.
 
     0.687
Amet_1920
KEGG: mac:MA0852 bacitracin ABC transporter, permease protein.
  
    0.642
Amet_3343
KEGG: bha:BH1976 hypothetical protein.
  
    0.638
Amet_4747
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: ctc:CTC01482 transcriptional activator protein.
 
   
 0.637
Amet_4737
Hypothetical protein.
 
    0.627
Amet_3201
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cac:CA_P0022 spore germination protein, GrkB.
  
     0.609
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.