STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BWX42_03595DNA polymerase IV; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)    
Predicted Functional Partners:
OOL80966.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.990
BWX42_09545
Membrane protein insertion efficiency factor YidD; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.933
OOL81618.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.914
OOL80514.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.912
OOL81377.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.878
OOL80666.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.844
OOL81173.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.839
OOL81824.1
D-ribose ABC transporter substrate-binding protein; Periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
 0.818
BWX42_08970
AMP-dependent synthetase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.796
OOL81156.1
Alpha-ketoacid dehydrogenase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.697
Your Current Organism:
Dolosigranulum pigrum
NCBI taxonomy Id: 29394
Other names: ATCC 51524, CCUG 33392, CIP 104051, D. pigrum, IFO 15550, LMG 15126, LMG:15126, NBRC 15550, NCFB 2975, NCIMB 702975
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.