STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOL81826.1PTS lactose transporter subunit IIB; Derived by automated computational analysis using gene prediction method: Protein Homology. (96 aa)    
Predicted Functional Partners:
OOL81825.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.989
OOL81827.1
PTS ascorbate transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.955
OOL81082.1
PTS ascorbate transporter subunit IIA; Phosphoenolpyruvate-dependent sugar phosphotransferase system; functions with enzymes IIB (sgaB; ulaB) and IIC (sgaT; ulaA) enzyme I and HPr for anaerobic utilization and uptake of L-ascorbate; sgaTBA are regulated by yifQ as well as Crp and Fnr; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.822
OOL81084.1
PTS ascorbate transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.744
OOL81078.1
Ascorbate 6-phosphate lactonase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.502
BWX42_09060
Transketolase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.447
OOL81824.1
D-ribose ABC transporter substrate-binding protein; Periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
OOL81939.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.438
OOL81822.1
D-xylose ABC transporter ATP-binding protein; With RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.427
rbsC
Ribose ABC transporter permease; Functions to transport ribose at high affinity; forms a complex with RbsA2C2B; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
       0.420
Your Current Organism:
Dolosigranulum pigrum
NCBI taxonomy Id: 29394
Other names: ATCC 51524, CCUG 33392, CIP 104051, D. pigrum, IFO 15550, LMG 15126, LMG:15126, NBRC 15550, NCFB 2975, NCIMB 702975
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