Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
creB | yycG | SRM1_05298 | SRM1_00061 | Transcriptional regulatory protein CreB. | Sensor histidine kinase YycG. | 0.842 |
cseB | pleD_6 | SRM1_00060 | SRM1_05400 | Transcriptional regulatory protein CseB. | Response regulator PleD. | 0.655 |
cseB | yycF | SRM1_00060 | SRM1_02579 | Transcriptional regulatory protein CseB. | Transcriptional regulatory protein YycF. | 0.755 |
cseB | yycG | SRM1_00060 | SRM1_00061 | Transcriptional regulatory protein CseB. | Sensor histidine kinase YycG. | 0.929 |
ompR_5 | yycF | SRM1_04167 | SRM1_02579 | Transcriptional regulatory protein OmpR. | Transcriptional regulatory protein YycF. | 0.771 |
ompR_5 | yycG | SRM1_04167 | SRM1_00061 | Transcriptional regulatory protein OmpR. | Sensor histidine kinase YycG. | 0.865 |
ompR_7 | yycG | SRM1_04309 | SRM1_00061 | Transcriptional regulatory protein OmpR. | Sensor histidine kinase YycG. | 0.850 |
phoP_1 | yycG | SRM1_02835 | SRM1_00061 | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP. | Sensor histidine kinase YycG. | 0.852 |
phoP_2 | yycF | SRM1_04187 | SRM1_02579 | Virulence transcriptional regulatory protein PhoP. | Transcriptional regulatory protein YycF. | 0.742 |
phoP_2 | yycG | SRM1_04187 | SRM1_00061 | Virulence transcriptional regulatory protein PhoP. | Sensor histidine kinase YycG. | 0.827 |
pleD_6 | cseB | SRM1_05400 | SRM1_00060 | Response regulator PleD. | Transcriptional regulatory protein CseB. | 0.655 |
pleD_6 | yycG | SRM1_05400 | SRM1_00061 | Response regulator PleD. | Sensor histidine kinase YycG. | 0.855 |
qseB_1 | yycF | SRM1_02331 | SRM1_02579 | Transcriptional regulatory protein QseB. | Transcriptional regulatory protein YycF. | 0.741 |
qseB_1 | yycG | SRM1_02331 | SRM1_00061 | Transcriptional regulatory protein QseB. | Sensor histidine kinase YycG. | 0.838 |
qseB_2 | yycF | SRM1_03164 | SRM1_02579 | Transcriptional regulatory protein QseB. | Transcriptional regulatory protein YycF. | 0.733 |
qseB_2 | yycG | SRM1_03164 | SRM1_00061 | Transcriptional regulatory protein QseB. | Sensor histidine kinase YycG. | 0.830 |
yycF | cseB | SRM1_02579 | SRM1_00060 | Transcriptional regulatory protein YycF. | Transcriptional regulatory protein CseB. | 0.755 |
yycF | ompR_5 | SRM1_02579 | SRM1_04167 | Transcriptional regulatory protein YycF. | Transcriptional regulatory protein OmpR. | 0.771 |
yycF | phoP_2 | SRM1_02579 | SRM1_04187 | Transcriptional regulatory protein YycF. | Virulence transcriptional regulatory protein PhoP. | 0.742 |
yycF | qseB_1 | SRM1_02579 | SRM1_02331 | Transcriptional regulatory protein YycF. | Transcriptional regulatory protein QseB. | 0.741 |
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