Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yjcC_1Putative membrane protein YjcC. (538 aa)    
Predicted Functional Partners:
gmr_4
Cyclic di-GMP phosphodiesterase Gmr.
   
 0.976
yfiN
Putative diguanylate cyclase YfiN.
   
 0.961
adrA_1
Putative diguanylate cyclase AdrA.
  
 0.929
pleD_1
Response regulator PleD.
 
   
 0.884
ydaM_1
Putative diguanylate cyclase YdaM.
   
 0.838
dosC_2
Diguanylate cyclase DosC.
   
 0.837
cph2_6
Phytochrome-like protein cph2.
 
     0.801
adrA_3
Putative diguanylate cyclase AdrA.
 
   
 0.787
adrA_2
Putative diguanylate cyclase AdrA.
 
     0.786
pleD_4
Response regulator PleD.
 
   
 0.774
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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