Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CEL26801.1 | znuA | SRM1_00122 | SRM1_00118 | Hypothetical protein. | High-affinity zinc uptake system protein ZnuA precursor; Belongs to the bacterial solute-binding protein 9 family. | 0.560 |
| CEL26801.1 | znuB_1 | SRM1_00122 | SRM1_00121 | Hypothetical protein. | High-affinity zinc uptake system membrane protein ZnuB. | 0.709 |
| CEL26801.1 | znuC_1 | SRM1_00122 | SRM1_00120 | Hypothetical protein. | Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.733 |
| CEL26801.1 | zur | SRM1_00122 | SRM1_00119 | Hypothetical protein. | Zinc uptake regulation protein; Belongs to the Fur family. | 0.706 |
| birA | rpoA | SRM1_05200 | SRM1_05155 | Bifunctional ligase/repressor BirA. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.596 |
| birA | znuB_1 | SRM1_05200 | SRM1_00121 | Bifunctional ligase/repressor BirA. | High-affinity zinc uptake system membrane protein ZnuB. | 0.422 |
| birA | znuC_1 | SRM1_05200 | SRM1_00120 | Bifunctional ligase/repressor BirA. | Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family. | 0.412 |
| birA | znuC_2 | SRM1_05200 | SRM1_03824 | Bifunctional ligase/repressor BirA. | Zinc import ATP-binding protein ZnuC. | 0.412 |
| birA | zur | SRM1_05200 | SRM1_00119 | Bifunctional ligase/repressor BirA. | Zinc uptake regulation protein; Belongs to the Fur family. | 0.553 |
| rpoA | birA | SRM1_05155 | SRM1_05200 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Bifunctional ligase/repressor BirA. | 0.596 |
| rpoA | rpoH | SRM1_05155 | SRM1_05429 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.944 |
| rpoA | rpoS | SRM1_05155 | SRM1_01160 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.953 |
| rpoA | zur | SRM1_05155 | SRM1_00119 | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Zinc uptake regulation protein; Belongs to the Fur family. | 0.678 |
| rpoH | rpoA | SRM1_05429 | SRM1_05155 | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.944 |
| rpoH | rpoS | SRM1_05429 | SRM1_01160 | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.451 |
| rpoH | trxA_1 | SRM1_05429 | SRM1_02935 | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | Thioredoxin. | 0.535 |
| rpoH | zur | SRM1_05429 | SRM1_00119 | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | Zinc uptake regulation protein; Belongs to the Fur family. | 0.577 |
| rpoS | rpoA | SRM1_01160 | SRM1_05155 | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.953 |
| rpoS | rpoH | SRM1_01160 | SRM1_05429 | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. | 0.451 |
| rpoS | trxA_1 | SRM1_01160 | SRM1_02935 | RNA polymerase sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | Thioredoxin. | 0.535 |
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