rimK_1 protein (Pseudomonas fluorescens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rimK_1

Ribosomal protein S6 modification protein. (301 aa)

Predicted Functional Partners:

CEL26991.1

0.998

CEL31925.1

0.780

CEL32492.1

0.774

CEL28510.1

0.770

ycgF_1

0.717

rpsF

0.714

gltB

0.713

pckA

0.699

hslO

0.694

ykfA

0.694

Your Current Organism:

Pseudomonas fluorescens

NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEL26991.1	hslO	SRM1_00314	SRM1_00318	Hypothetical protein.	33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.	0.694
CEL26991.1	pckA	SRM1_00314	SRM1_00319	Hypothetical protein.	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.	0.694
CEL26991.1	rimK_1	SRM1_00314	SRM1_00313	Hypothetical protein.	Ribosomal protein S6 modification protein.	0.998
CEL26991.1	ycgF_1	SRM1_00314	SRM1_00315	Hypothetical protein.	Blue light-and temperature-regulated antirepressor YcgF.	0.717
CEL26991.1	ykfA	SRM1_00314	SRM1_05037	Hypothetical protein.	Putative murein peptide carboxypeptidase.	0.694
CEL28510.1	rimK_1	SRM1_01849	SRM1_00313	Hypothetical protein.	Ribosomal protein S6 modification protein.	0.770
CEL31925.1	rimK_1	SRM1_05299	SRM1_00313	Hypothetical protein.	Ribosomal protein S6 modification protein.	0.780
CEL32492.1	rimK_1	SRM1_05866	SRM1_00313	Hypothetical protein.	Ribosomal protein S6 modification protein.	0.774
gltB	pckA	SRM1_00466	SRM1_00319	Glutamate synthase [NADPH] large chain precursor.	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.	0.979
gltB	rimK_1	SRM1_00466	SRM1_00313	Glutamate synthase [NADPH] large chain precursor.	Ribosomal protein S6 modification protein.	0.713
hslO	CEL26991.1	SRM1_00318	SRM1_00314	33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.	Hypothetical protein.	0.694
hslO	pckA	SRM1_00318	SRM1_00319	33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.	0.811
hslO	rimK_1	SRM1_00318	SRM1_00313	33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.	Ribosomal protein S6 modification protein.	0.694
pckA	CEL26991.1	SRM1_00319	SRM1_00314	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.	Hypothetical protein.	0.694
pckA	gltB	SRM1_00319	SRM1_00466	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.	Glutamate synthase [NADPH] large chain precursor.	0.979
pckA	hslO	SRM1_00319	SRM1_00318	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.	33 kDa chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.	0.811
pckA	rimK_1	SRM1_00319	SRM1_00313	Phosphoenolpyruvate carboxykinase [ATP]; Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA. Belongs to the phosphoenolpyruvate carboxykinase (ATP) family.	Ribosomal protein S6 modification protein.	0.699
rimK_1	CEL26991.1	SRM1_00313	SRM1_00314	Ribosomal protein S6 modification protein.	Hypothetical protein.	0.998
rimK_1	CEL28510.1	SRM1_00313	SRM1_01849	Ribosomal protein S6 modification protein.	Hypothetical protein.	0.770
rimK_1	CEL31925.1	SRM1_00313	SRM1_05299	Ribosomal protein S6 modification protein.	Hypothetical protein.	0.780

page 1 of 2

Server load: medium (54%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Co-occurrence

Experiments

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About