STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
occM_1Octopine transport system permease protein OccM. (229 aa)    
Predicted Functional Partners:
fliY_1
Cystine-binding periplasmic protein precursor.
  
 0.980
artJ_1
ABC transporter arginine-binding protein 1 precursor.
  
 0.966
occP_1
Octopine permease ATP-binding protein P.
  
 0.945
fliY_2
Cystine-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.
  
 0.941
artQ_1
Arginine ABC transporter permease protein ArtQ.
 
 
0.937
argT_1
Lysine-arginine-ornithine-binding periplasmic protein precursor.
  
 0.907
hisP_2
Histidine transport ATP-binding protein HisP.
  
 0.889
hisP_1
Histidine transport ATP-binding protein HisP.
  
 0.886
argT_2
Lysine-arginine-ornithine-binding periplasmic protein precursor; Belongs to the bacterial solute-binding protein 3 family.
  
 0.884
argT_4
Lysine-arginine-ornithine-binding periplasmic protein precursor.
  
 0.884
Your Current Organism:
Pseudomonas fluorescens
NCBI taxonomy Id: 294
Other names: ATCC 13525, Bacillus fluorescens, Bacillus fluorescens liquefaciens, Bacterium fluorescen, CCEB 546, CFBP 2102, CIP 69.13, DSM 50090, IAM 12022, IFO 14160, JCM 5963, Liquidomonas fluorescens, NBRC 14160, NCCB 76040, NCIB 9046, NCIB:9046, NCIMB 9046, NCTC 10038, NRRL B-14678, P. fluorescens, Pseudomonas sp. AU2390, Pseudomonas sp. BZ64, Pseudomonas sp. FY32, Pseudomonas sp. HSA2/2016, Pseudomonas sp. HSA3/2016, Pseudomonas sp. ISSDS-433, Pseudomonas sp. JCM 17186, Pseudomonas sp. JCM 2779, Pseudomonas sp. KH-20150KS3, Pseudomonas sp. LBUM223, Pseudomonas sp. LBUM636, Pseudomonas sp. SM2/2016, RH 818, VKM B-894, bacterium P1-1, strain M. Rhodes 28/5
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